Model Information

SK-MES-1

Overview

Name(s) SK-MES-1

Tissue Lung

Cancer Type Squamous Cell Lung Carcinoma

Tissue Status Metastasis

Sample Site Pleural effusion

Cancer Type Details Squamous Cell Lung Carcinoma   (NCIT C3493)

GDSC Growth Estimate 2.27 +/- 0.37 (20 replicates)

Derivation

Model Type Cell Line

Growth Properties Adherent

Model treatment

Year Generated

Model Genomics

MSI Status MSS

Ploidy (SNP6) 2.474

Ploidy (WES) 2.78

Mutations per Mb 54.76

Summary

Gender Male

Ethnicity White

Age at sampling 65

History

Smoker Status Unknown

Diagnosis & Treatment

Tumour Stage No Data

Prior treatment Unknown

Clinical Profiling

Loading cancer drivers
Mutations & Copy Number Alterations
Loading Mutations
Crispr KO - highlights from Project SCORE
Loading Crispr KO
RNASeq
Loading RNASeq
Proteomics
Loading Proteomics
Gene Fusions
Loading Gene Fusions
Dataset Availability

  • Whole Exome Sequencing
    Raw Whole Exome Sequencing (BAM/CRAM) - Source: Sanger
    Processed SIDM01103_Sanger_wes_snp_vaf.caveman_c.annot_drv.vcf.gz (214.72 kB) - Source: Sanger
    Processed SIDM01103_Sanger_wes_indel_vaf.pindel.annot_drv.vcf.gz (30.63 kB) - Source: Sanger
  • Microarray Gene Expression
    Raw Microarray Gene Expression (CEL) - Source: Sanger
  • RNASeq
    Processed SIDM01103_rnaseq.csv.zip (568.9 kB) - Source: Broad
  • Copy Number Variation
    Processed SIDM01103_WES_pureCN_CNV_segments.csv.zip (4.8 kB) - Source: mixed
    Processed SIDM01103_Sanger.PureCN_GATK.WES.panel.cnv.pdf (152.84 kB) - Source: Sanger
    Raw Copy Number Variation - Source: Sanger
    Processed SIDM01103_WES_pureCN_CNV_genes.csv.zip (714.79 kB) - Source: mixed
  • DNA Methylation
    Raw DNA Methylation (IDAT) - Source: Sanger
  • Fusion data
    Processed SIDM01103_fusions.csv.zip (507 B) - Source: Sanger
  • Proteomics
    Processed SIDM01103_proteomics.csv.zip (89.94 kB) - Source: Sanger
    • Identifiers
    Suppliers
    Note:  * denotes a commercial supplier.

    Cell Model Passports

    • UI Version: 1.14.0
    • API Version: 1.16.0
    • Data Version: 2.13.0

    Websites

    Contact

    depmap@sanger.ac.uk

    Wellcome Sanger Institute
    Wellcome Genome Campus
    Hinxton, Cambridgeshire
    CB10 1SA, UK

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